Changes on CRAN

The ‘Changes on CRAN’ article from the 2011-2 issue.

1 New packages in CRAN task views

Bayesian

BCBCSF, PottsUtils, bayesQR, profdpm.

ChemPhys

hyperSpec.

Cluster

mritc, protoclust, tclust.

Distributions

AtelieR, glogis, smoothmest.

Econometrics

mvProbit, rms.

Environmetrics

EcoHydRology, HydroMe, aqp, climatol, forecast, hydroGOF, hydroTSM, latticeDensity, oce, openair, seas, simba, soil.spec, soiltexture, topmodel, wasim.

ExperimentalDesign

DiceEval, DiceView, GAD, TEQR, Vdgraph, asd, gsDesign, mkssd, mxkssd, odprism, osDesign, qtlDesign, qualityTools, support.CEs.

Finance

NMOF, PairTrading, betategarch, lifecontingencies, maRketSim, opefimor, rugarch.

HighPerformanceComputing

OpenCL.

NaturalLanguageProcessing

RTextTools.

OfficialStatistics

SeleMix, deducorrect, editrules.

Optimization

ROI\(^*\), Rmosek, minpack.lm.

Phylogenetics

OUwie, caper, distory, motmot, phylosim, phytools, treebase.

Psychometrics

EstCRM, KernSmoothIRT, TripleR, cacIRT, fwdmsa, mRm, mirt\(^*\), mixRasch, modelfree, psychomix, psychotools.

Robust

FRB, RobAStBase, RobustAFT, multinomRob, rgam.

SocialSciences

rms.

Spatial

Metadata, UScensus2000blkgrp, UScensus2000cdp, UScensus2000tract, adehabitat, landsat.

TimeSeries

ctarma, cts, hydroGOF, hydroTSM, wq.

(* = core package)

2 New contributed packages

ACNE, ANN, APSIMBatch, AUCRF, AWS.tools, Aelasticnet, AtelieR, AutoSEARCH, BCBCSF, BNPdensity, BaSTA, Barnard, BinNor, BiomarkeR, CDM, CHCN, CLSOCP, CONOR, CONORData, CRM, CatDyn, CityPlot, CommonTrend, CompModSA, DATforDCEMRI, DPM.GGM, DWD, DiagTest3Grp, DirichletReg, Dodge, EL, EcoHydRology, EstCRM, ExomeCNV, FFD, FIAR, FLLat, FastRWeb, FlexParamCurve, ForImp, FourScores, GGEBiplotGUI, GMD, GMMBoost, GUTS, GWAtoolbox, GhcnDaily, HAC, HMP, HMPTrees, HTSCluster, HiveR, Hotelling, IBDsim, ISDA.R, ISIPTA, ISOweek, JoSAE, KRLS, KernSmoothIRT, KoNLP, LDcorSV, LEAPFrOG, LGS, LN3GV, LTPDvar, LaF, Lahman, LargeRegression, LatticeKrig, LifeTables, M3, MAINT.Data, MBCluster.Seq, MCUSUM, MDM, MFSAS, MIPHENO, MPCI, MPTinR, MSeasy, MSeasyTkGUI, MVPARTwrap, MVR, Maeswrap, Mangrove, MatrixEQTL, McParre, MergeGUI, Metadata, MigClim, MindOnStats, MissingDataGUI, MultiPhen, NBDdirichlet, NMOF, NPsimex, NSA, NanoStringNorm, NeMo, ODB, ORCME, OUwie, OpenCL, OpenRepGrid, PACE, PAWL, PCICt, PP, PSCBS, PairTrading, PerfMeas, PhaseType, PoiClaClu, PopGenKit, PrecipStat, QLSpline, R1magic, R2STATS, RDF, REGENT, RHT, RHive, RMAWGEN, RMongo, RNetLogo, ROI, ROI.plugin.glpk, ROI.plugin.quadprog, ROI.plugin.symphony, RRF, RSKC, RSofia, RTextTools, RVowpalWabbit, RWeather, RXKCD, Rcell, Rclusterpp, RcmdrPlugin.KMggplot2, RcmdrPlugin.coin, RcmdrPlugin.mosaic, RcppEigen, Rdrools, Rdroolsjars, Rearrangement, ResourceSelection, Rfun, RghcnV3, Rjms, Rjmsjars, Rknots, Rlof, Rmosek, RobustAFT, Rwinsteps, SBSA, SNPRelate, SPEI, SPIAssay, SVGMapping, SearchTrees, SeleMix, SpatialVx, SpatioTemporal, SportsAnalytics, StateTrace, StochaTR, StreamingLm, SuperLearner, Survgini, SynergizeR, TAHMMAnnot, TDMR, TSPC, TextRegression, ThreeWay, Tinflex, TradeStrategyAnalyzer, Tsphere, UScensus2010, VBLPCM, VBMA4hmm, Vdgraph, VisCov, WaveletCo, abcdeFBA, abn, aggrisk, allelematch, alphashape3d, anaglyph, aqfig, arf3DS4, arrayhelpers, ascrda, auteur, bamdit, barcode, batade, bcool, bdpv, betategarch, betfairly, bfa, bimetallic, binomTools, bios2mds, biseVec, blm, blme, bstats, bwsurvival, cacIRT, calibFit, calmate, caper, capushe, cardidates, caribou, cccrm, cda, cghseg, cit, climdex.pcic, clpAPI, clusterPower, coefplot, colorout, comorbidities, confReg, conjoint, cotrend, cplexAPI, cplm, crimCV, crn, crs, ctarma, cvTools, cvplogistic, cyphid, cytoDiv, dbstats, dcens, dcmle, detect, devtools, dgof, dhglm, dielectric, dinamic, dmRTools, doRNG, drawExpression, dynpred, dynsurv, ebal, edcc, edesign, eigeninv, elec.strat, emdist, emma, epade, etable, evtree, excel.link, ezsim, fairselect, fdaMixed, fdrci, features, finebalance, fitDRC, flexsurv, flip, forams, fpp, fun, gRim, gamboostLSS, gb, gbRd, gcmr, genridge, ggdendro, ggmap, glm2, glmmLasso, glogis, glpkAPI, goric, gpairs, granovaGG, graphComp, gridSVG, growthrate, gsmoothr, gstudio, gtx, gwrr, h5r, hdlm, holdem, iFad, iRefR, iRegression, idr, informR, int64, intRegGOF, intergraph, isopat, iteRates, itsmr, jpeg, kBestShortestPaths, kinship2, klausuR, last.call, latticeDensity, lazyWeave, lgcp, libamtrack, lifecontingencies, liso, lmmfit, logconcens, logcondiscr, lorec, maRketSim, mail, maxent, metaLik, metrumrg, minimax, mirt, mixcat, mixexp, mleur, mmeln, motmot, mpc, multicool, multitable, mvProbit, mvtsplot, ndl, ndvits, nfda, nloptr, objectProperties, objectSignals, obliqueRF, ocomposition, odprism, opefimor, opencpu.encode, oposSOM, orsk, osDesign, osmar, paloma, partykit, pbkrtest, pcrcoal, pdist, permute, phytools, pks, planar, playitbyr, plsRbeta, plumbr, polyphemus, polytomous, ppcor, ppiPre, prLogistic, pragma, probemapper, productplots, protoclust, psychomix, psychotools, pxR, qPCR.CT, qmrparser, qqplotter, qrfactor, qtlmt, rJPSGCS, rJavax, randomNames, rasclass, rasterVis, rationalfun, rdatamarket, recommenderlabBX, recommenderlabJester, reglogit, rfPermute, rfishbase, rje, rmongodb, robeth, robustreg, rockchalk, rococo, roxygen2, rplotengine, rrBlupMethod6, rrlda, rsae, rsem, rtf, rtfbs, rugarch, rzmq, s4vd, saemix, sampSurf, sas7bdat, scales, semdiag, separationplot, siatclust, smcUtils, smfsb, softclassval, sperich, spider, spt, squash, sss, standGL, stratasphere, stremo, support.CEs, survC1, swst, taRifx, tables, tabplotGTK, tabuSearch, tilting, topologyGSA, treebase, trifield, truncSP, txtplot, useful, vegclust, viopoints, walkscoreAPI, weightedScores, whisker, wordcloud, xgrid

3 Other changes

• The following packages which were previously double-hosted on CRAN and Bioconductor were moved to the Archive, and are now solely available from Bioconductor: CORREP, Icens, RBGL, RLMM, gpls, graphite, hopach, impute, maanova, qvalue.

• The following packages were moved to the Archive: ADaCGH, Ardec, Bhat, DescribeDisplay, Design, LLdecomp, MAMA, MHadaptive, Peak2Trough, QRMlib, RBrownie, RStackExchange, Rsac, SQLiteDF, TreeRank, ZIGP, arrayImpute, arrayMissPattern, atmi, bdoc, bs, diseasemapping, fArma, fCalendar, fSeries, fUtilities, flexCrossHaz, googlebigquery, halp, infochimps, irtProb, maticce, miniGUI, muS2RC, muStat, muUtil, npmc, powerpkg, tpsDesign, uniPlot.

• The following packages were resurrected from the Archive: SNPMaP, SNPMaP.cdm, SoPhy, birch, csampling, cts, elec, formula.tools, hierfstat, marg, sabreR.